Basic Information
Locus ID:
GOSA_00006565
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig52 | 4159931 | 4166626 | - | GOSA_00006565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 54,368.84 Da | 43.01 | 80.42 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 216 | 241 | 5.4E-5 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 166 | 212 | 2.1E-6 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 2.4E-18 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 369 | 7.95E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 269 | 3.95E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 382 | 1.4E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 143 | 1.1E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 144 | 264 | 1.2E-20 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.16 | IPR002110 |
| SMART | SM00248 | ANK_2a | 172 | 201 | 1.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 215 | 247 | 1.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 0.97 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.60279 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 172 | 201 | 10.179323 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 172 | 204 | 10.84643 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.430799 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 215 | 241 | 10.656889 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 364 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 215 | 241 | 10.68617 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.409914 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 329 | 338 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 479 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010693474.1 | E3 ubiquitin-protein ligase XBAT33 [Beta vulgaris subsp. vulgaris] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RE20 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_083260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology