Basic Information
Locus ID:
GOSA_00006439
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig52 | 3117928 | 3121779 | + | GOSA_00006439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 38,225.99 Da | 40.24 | 83.30 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 47 | 168 | 2.0E-9 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 45 | 178 | 1.02E-16 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 23 | 187 | 5.6E-16 | IPR036431 |
| SMART | SM00501 | bright_3 | 43 | 173 | 2.7E-4 | IPR001606 |
| SMART | SM01014 | ARID_2 | 39 | 168 | 2.4E-9 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 42 | 172 | 12.111578 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 339 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010672469.2 | high mobility group B protein 10 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q7P0 | ARID domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_211070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology