Basic Information
Locus ID:
GOSA_00006296
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig52 | 1892706 | 1904324 | + | GOSA_00006296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 66,850.83 Da | 54.02 | 59.49 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 1.57744E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 1.0E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 333 | 6.2E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 275 | 2.59E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 215 | 5.74E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 2.08E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 562 | 587 | 4.39E-5 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 561 | 589 | 4.8E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 264 | 523 | 5.3E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 217 | 3.0E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 3.3E-21 | IPR002867 |
| SMART | SM00547 | zf_4 | 564 | 588 | 1.5E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 281 | 342 | 0.059 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 562 | 589 | 8.388616 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 49.820007 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 181 | 8.638745 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 566 | 585 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| Coils | Coil | Coil | 347 | 374 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RVM2 | RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_029080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology