Basic Information
Locus ID:
GOSA_00006211
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig52 | 1165015 | 1167827 | - | GOSA_00006211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 47,754.97 Da | 46.97 | 66.04 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 284 | 367 | 4.7E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 384 | 415 | 5.9E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 284 | 368 | 6.9E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 146 | - | - |
| Coils | Coil | Coil | 273 | 310 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_021730233.1 | uncharacterized protein LOC110697193 [Chenopodium quinoa] | 0 |
| TrEMBL | V9P4T0 | PAPA-1-like family protein OS=Suaeda liaotungensis OX=154002 GN=PAPA1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology