Basic Information
Locus ID:
GOSA_00006187
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig52 | 942793 | 953435 | - | GOSA_00006187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 78,749.36 Da | 48.83 | 79.72 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 447 | 686 | 1.06401E-99 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 113 | 203 | 5.3E-12 | IPR015063 |
| Pfam | PF08969 | USP8 dimerisation domain | 1 | 65 | 1.6E-5 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 443 | 547 | 1.2E-17 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 446 | 550 | 1.01E-17 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 99 | 227 | 2.9E-32 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 430 | 581 | 1.1E-46 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 604 | 686 | 2.1E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 88 | 7.4E-17 | - |
| SMART | SM00232 | pad1_6 | 446 | 567 | 2.6E-8 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 446 | 572 | 23.281906 | IPR037518 |
| Coils | Coil | Coil | 42 | 80 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RGC4 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_069510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology