Basic Information
Locus ID:
GOSA_00006186
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig52 | 940096 | 942175 | - | GOSA_00006186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 23,911.12 Da | 48.07 | 81.62 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 43 | 82 | 9.9E-9 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 37 | 92 | 1.44E-12 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 18 | 108 | 1.6E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 128 | 210 | 2.8E-21 | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.2 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_048496662.1 | AMSH-like ubiquitin thioesterase 3 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B6WIG9 | AMSH-like ubiquitin thioesterase 3 isoform X4 OS=Gossypium australe OX=47621 GN=EPI10_021507 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology