Basic Information
Locus ID:
GOSA_00005793
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig60 | 1973223 | 1979219 | + | GOSA_00005793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 54,784.87 Da | 55.59 | 85.64 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 252 | 300 | 1.22258E-16 | - |
| Pfam | PF12906 | RING-variant domain | 252 | 299 | 1.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 303 | 1.32E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 307 | 3.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 251 | 300 | 1.9E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 244 | 306 | 20.246775 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 502 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010684110.2 | uncharacterized protein LOC104898704 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RWD1 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology