Basic Information
Locus ID:
GOSA_00005789
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig60 | 1925830 | 1931566 | + | GOSA_00005789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 42,325.39 Da | 57.89 | 62.51 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 320 | 360 | 6.59217E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 319 | 365 | 5.4E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 366 | 7.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 370 | 1.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 359 | 2.9E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 2 | 58 | 280.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 294 | 371 | 2.1E-8 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 360 | 11.353297 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 41 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010684105.1 | probable E3 ubiquitin-protein ligase LOG2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0M0 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_007980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology