Basic Information
Locus ID:
GOSA_00005691
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig60 | 631452 | 632156 | - | GOSA_00005691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 26,405.22 Da | 57.88 | 89.49 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 54 | 97 | 1.63673E-14 | - |
| Pfam | PF13639 | Ring finger domain | 53 | 97 | 8.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 103 | 1.26E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 103 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 55 | 96 | 7.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 55 | 97 | 12.474524 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 55 | 96 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_010683988.2 | RING-H2 finger protein ATL8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDD3 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_192020 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15013 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030722 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g161280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27243, Sbi_jg33291 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7993 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005691 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71325, Sgl74920 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008226, gene:ENSEOMG00000035854 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0018960, CQ.Regalona.r1.7BG0021520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30274110 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01630, Ftri12G07226 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2190 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1492 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6105 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15304 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3968 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.207 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19831 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-399 |