Basic Information
Locus ID:
GOSA_00005604
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig156 | 4714940 | 4719351 | + | GOSA_00005604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 47,614.07 Da | 50.79 | 87.06 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 137 | 294 | 1.2E-74 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 219 | 292 | 4.2E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 125 | 217 | 1.5E-36 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 419 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_010690750.1 | ubiquitin fusion degradation protein 1 homolog isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RPW9 | Ubiquitin fusion degradation protein 1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_047510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology