Basic Information
Locus ID:
GOSA_00005455
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig156 | 3583968 | 3584843 | - | GOSA_00005455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.14 | 33,937.91 Da | 50.34 | 96.67 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 133 | 157 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048493319.1 | E3 ubiquitin-protein ligase ZSWIM2-like [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LGV8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26583 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13624, Sbi_jg1407, Sbi_jg52269 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20498, Seu_jg3331, Seu_jg9580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005455 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl55767, Sgl60975, Sgl72806, Sgl73728, Sgl73751, Sgl76345 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2119 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00360.v3.1 |