Basic Information
Locus ID:
GOSA_00005215
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig156 | 1511697 | 1518030 | - | GOSA_00005215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 167,170.36 Da | 34.75 | 106.86 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 311 | 598 | 2.53467E-101 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1244 | 1464 | 7.78531E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 927 | 1221 | 2.09835E-91 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 624 | 824 | 1.97947E-111 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 929 | 1171 | 1.2E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1263 | 1411 | 2.0E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 310 | 577 | 1.2E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 642 | 776 | 2.9E-21 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 846 | 4.83E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 927 | 1228 | 6.02E-53 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 300 | 609 | 2.09E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1237 | 1478 | 8.64E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 891 | 1227 | 3.1E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1229 | 1482 | 3.6E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 608 | 867 | 3.5E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 288 | 606 | 2.7E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 651 | 824 | 1.3E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1272 | 1457 | 2.2E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 929 | 1209 | 37.605892 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1246 | 1480 | 18.654257 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 22.682514 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 310 | 590 | 33.348656 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
| Coils | Coil | Coil | 471 | 491 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology