Basic Information
Locus ID:
GOSA_00005159
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig156 | 1150091 | 1162585 | + | GOSA_00005159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 100,763.09 Da | 42.41 | 85.19 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 344 | 476 | 2.58354E-70 | - |
| CDD | cd17920 | DEXHc_RecQ | 215 | 343 | 1.04214E-54 | - |
| Pfam | PF00570 | HRDC domain | 727 | 789 | 1.3E-10 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 230 | 323 | 3.4E-6 | IPR011545 |
| Pfam | PF09382 | RQC domain | 567 | 682 | 4.3E-20 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 360 | 466 | 1.5E-18 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 478 | 559 | 3.9E-16 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 342 | 610 | 3.23E-57 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 722 | 795 | 1.68E-10 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 210 | 335 | 4.93E-16 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 562 | 680 | 8.4E-17 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 209 | 343 | 7.2E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 344 | 561 | 1.9E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 718 | 801 | 4.0E-16 | IPR044876 |
| SMART | SM00490 | helicmild6 | 386 | 467 | 1.5E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 569 | 680 | 6.5E-22 | IPR018982 |
| SMART | SM00341 | hrdc7 | 722 | 799 | 4.9E-4 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 215 | 620 | 1.5E-129 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 226 | 336 | 13.615059 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 722 | 803 | 12.291731 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 361 | 522 | 18.889259 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 376 | 414 | 9.002002 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 275 | 284 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 825 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 848 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021844419.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 4A [Spinacia oleracea] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology