Basic Information
Locus ID:
GOSA_00005133
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig156 | 901135 | 909799 | + | GOSA_00005133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 119,462.85 Da | 42.21 | 79.84 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 395 | 665 | 6.77866E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 490 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 864 | 897 | 0.0066 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 783 | 1044 | 5.5E-36 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 417 | 672 | 1.94E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 514 | 672 | 6.1E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 940 | 1055 | 9.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 513 | 4.9E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 673 | 935 | 2.0E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 815 | 855 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 626 | 667 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 949 | 990 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 41.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 858 | 897 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 1.5E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 580 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 775 | 812 | 100.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 865 | 897 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 632 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 865 | 906 | 12.045688 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 477 | 491 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1048 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1081 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_021731770.1 | protein TOPLESS-like [Chenopodium quinoa] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803LE69 | TOPLESS OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology