Basic Information
Locus ID:
GOSA_00004974
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 4931696 | 4942393 | - | GOSA_00004974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 198,050.44 Da | 45.62 | 70.43 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 1011 | 1060 | 1.5E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1079 | 1123 | 2.66E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1077 | 1185 | 7.9E-17 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 345 | 357 | 90.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 712 | 724 | 4.5 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1088 | 1163 | 3.9E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1164 | 1223 | 9.7 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 390 | 402 | 13.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 542 | 554 | 21.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 475 | 487 | 0.33 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 618 | 630 | 3.4 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1086 | 1165 | 8.8848 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1089 | 1162 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 473 | 484 | 4.8E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 390 | 400 | 4.8E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 540 | 550 | 4.8E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1459 | 1479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1603 | 1622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1688 | 1708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1535 | 1589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1565 | 1579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1688 | 1712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1603 | 1626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 938 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_048499952.1 | uncharacterized protein LOC104894503 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology