Basic Information
Locus ID:
GOSA_00004952
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 4759097 | 4760467 | + | GOSA_00004952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 53,206.31 Da | 51.35 | 72.04 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 138 | 199 | 2.9E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 221 | 264 | 5.6E-10 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 69 | 100 | 1.4E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 149 | 2.06E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 206 | 6.71E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 218 | 268 | 2.1E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 195 | 456 | 3.2E-77 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 151 | 9.5E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 203 | 273 | 0.15 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 137 | 199 | 1.5E-17 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 65 | 277 | 43.959343 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 113 | 9.066582 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.3 | - | 0 |
| RefSeq | XP_010679272.2 | probable E3 ubiquitin-protein ligase ARI5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RW54 | RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_022340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology