Basic Information
Locus ID:
GOSA_00004951
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 4755120 | 4757476 | + | GOSA_00004951 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 63,522.90 Da | 48.20 | 66.58 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 98 | 149 | 9.74239E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 256 | 298 | 8.4E-9 | IPR002867 |
| Pfam | PF13445 | RING-type zinc-finger | 98 | 138 | 4.4E-4 | IPR027370 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 169 | 233 | 7.6E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 240 | 1.19E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 180 | 2.61E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 300 | 1.9E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 180 | 2.8E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 229 | 481 | 1.8E-70 | - |
| SMART | SM00647 | ibrneu5 | 241 | 305 | 0.018 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 168 | 233 | 2.3E-17 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 98 | 148 | 10.055033 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 94 | 309 | 44.893471 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 524 | 543 | - | IPR001876 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 215 | 224 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010679274.2 | probable E3 ubiquitin-protein ligase ARI8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MFJ4 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology