Basic Information
Locus ID:
GOSA_00004841
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
negative regulation of type I interferon-mediated signaling pathway
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 3692739 | 3700285 | + | GOSA_00004841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 89,794.29 Da | 58.84 | 88.18 | -0.10 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73930.1 | 0 | |
| RefSeq | XP_010695725.2 | protein DENND6A isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8BH65 | Protein DENND6A OS=Mus musculus OX=10090 GN=Dennd6a PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B852 | UDENN domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g126800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18513, jg18514 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001463 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30894, Sbi_jg58384 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28262 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004841 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54927, Sgl60184 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006446, gene:ENSEOMG00000021649 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018390, CQ.Regalona.r1.5BG0019560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30146100 |
| Apiaceae | Apium graveolens | 1 | Ag3G00939 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005010, COCNU_03G010000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696133 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1758.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G27079 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018286m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g070890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2531 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0645s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g05400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.422 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037262 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G36978, Lb0G37045, Lb2G11415, Lb6G30367 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4285, BH01.4588, CH01.4896 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0241750, gene-QOZ80_3BG0286320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0390630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069204 |
| Poaceae | Oryza coarctata | 1 | Oco06G009010 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g15390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G411400, gene-BS78_K107600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102125, Pt_Chr0102151 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G007060, Chr07G004570, Chr12G009470, Chr12G009520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G381000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG011780, gene_TRIDC4BG038650 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G086500.1, TraesCS4B02G217900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb011310_P002, Zm00001eb078910_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2186 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1596 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2717, evm.TU.LG02.133, evm.TU.LG03.1180 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.162 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14288 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10022 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14409 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.281 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010104 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-309 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19064, nbisL1-mrna-20050 |
| Salicaceae | Populus euphratica | 2 | populus_peu28377, populus_peu29841 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633299 |
| Solanaceae | Solanum chilense | 1 | SOLCI006254600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014895 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1364 |