Basic Information
Locus ID:
GOSA_00004708
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 2485696 | 2486358 | + | GOSA_00004708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 25,142.13 Da | 31.31 | 94.36 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 182 | 212 | 2.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 216 | 1.79E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 216 | 1.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 211 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 212 | 9.641949 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009587720.2 | E3 ubiquitin-protein ligase RING1-like [Nicotiana tomentosiformis] | 0 |
| Q7ZW78 | E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1S3ZYM7 | E3 ubiquitin-protein ligase RING1-like OS=Nicotiana tabacum OX=4097 GN=LOC107791812 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004708 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54776, Sgl54777, Sgl60079 |