Basic Information
Locus ID:
GOSA_00004701
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 2453616 | 2454071 | - | GOSA_00004701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 17,392.55 Da | 62.81 | 87.68 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 112 | 144 | 2.3E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 149 | 9.79E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 150 | 1.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 143 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 144 | 10.881201 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021866525.1 | uncharacterized RING finger protein ZK637.14-like [Spinacia oleracea] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3ZYM7 | E3 ubiquitin-protein ligase RING1-like OS=Nicotiana tabacum OX=4097 GN=LOC107791812 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004701 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl45396, Sgl50189, Sgl54774, Sgl60077 |