Basic Information
Locus ID:
GOSA_00004504
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Protein of unknown function (DUF2921)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 486050 | 487277 | + | GOSA_00004504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 39,846.19 Da | 48.77 | 79.50 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 73 | 135 | 3.0E-8 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 68 | 179 | 1.04E-15 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 39 | 243 | 1.6E-27 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 69 | 223 | 12.92955 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021768578.1 | probable ubiquitin-conjugating enzyme E2 23 [Chenopodium quinoa] | 0 |
| Q9NR09 | Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9TBU8 | putative ubiquitin-conjugating enzyme E2 38 OS=Sesamum indicum OX=4182 GN=LOC105163341 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8985 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004504 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl01756, Sgl01759, Sgl06915, Sgl06917, Sgl65488, Sgl65652 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000024363 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016482 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1705 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19818 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6381 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.22 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22086 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12389 |
| Salicaceae | Populus euphratica | 1 | populus_peu16603 |
| Solanaceae | Solanum chilense | 1 | SOLCI000868500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016034 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1743 |