Basic Information
Locus ID:
GOSA_00004477
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig87 | 252808 | 261522 | - | GOSA_00004477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 63,152.51 Da | 60.11 | 49.56 | -1.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 530 | 561 | 4.0E-8 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 430 | 514 | 9.2E-18 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 429 | 514 | 1.4E-24 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 284 | - | - |
| Coils | Coil | Coil | 435 | 460 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021768735.1 | uncharacterized protein LOC110733032 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology