Basic Information
Locus ID:
GOSA_00003843
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig61 | 4003909 | 4008198 | - | GOSA_00003843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 58,281.72 Da | 63.02 | 65.59 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 38 | 79 | 1.3E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 86 | 2.65E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 131 | 4.8E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 39 | 79 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 79 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 253 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14220.1 | RING-H2 group F1A. encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond. | 0 |
| RefSeq | XP_010695278.1 | E3 ubiquitin-protein ligase RHF1A [Beta vulgaris subsp. vulgaris] | 0 |
| Q4TU14 | E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BCS4 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g123950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12535 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15596 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah011649, Ah011922, Ah020230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5047, Sbi_jg6818 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13002 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003843 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00365, Sgl05443 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013669, gene:ENSEOMG00000031850 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013960, CQ.Regalona.r1.3BG0014030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30237250 |
| Apiaceae | Apium graveolens | 1 | Ag8G01632 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G28976 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025539m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015890.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1035, Ceq09G1906 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1080, Cgl09G2079 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1092 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1699, evm.TU.LG11.1057 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11340 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.475, evm.TU.Scaffold_6_RagTag.711 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15979 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12539 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-591 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.428, evm.TU.utg000019l.934 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006879, Maker00012590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15345, nbisL1-mrna-6332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2096 |
| Salicaceae | Populus euphratica | 2 | populus_peu07348, populus_peu21343 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004394200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032476 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9357 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1426 |