Basic Information
Locus ID:
GOSA_00003739
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig61 | 2312380 | 2313732 | + | GOSA_00003739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 50,146.46 Da | 44.84 | 75.96 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 58 | 2.0E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 155 | 191 | 1.5E-4 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 194 | 240 | 8.3E-12 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 401 | 6.28E-5 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 116 | 377 | 1.96E-36 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 82 | 341 | 4.7E-32 | IPR015915 |
| SMART | SM00612 | kelc_smart | 156 | 204 | 2.4E-7 | IPR006652 |
| SMART | SM00256 | fbox_2 | 21 | 61 | 8.3E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 206 | 253 | 1.4E-8 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 113 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_010672540.2 | F-box/kelch-repeat protein At2g44130 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QG85 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_189150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology