Basic Information
Locus ID:
GOSA_00003648
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig61 | 843606 | 847989 | - | GOSA_00003648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 50,930.18 Da | 40.77 | 75.44 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 114 | 428 | 3.1E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 76 | 463 | 1.02E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 67 | 464 | 3.1E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 241 | 267 | 220.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 321 | 342 | 14.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 291 | 311 | 2400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 268 | 289 | 3200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 350 | 371 | 2400.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 298 | 311 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021752444.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology