Basic Information
Locus ID:
GOSA_00003645
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig61 | 802940 | 812828 | + | GOSA_00003645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 129,273.56 Da | 65.64 | 54.98 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 723 | 852 | 7.42432E-62 | - |
| CDD | cd00201 | WW | 23 | 52 | 6.57776E-5 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 735 | 843 | 1.9E-31 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 7.7E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 528 | 698 | 2.9E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 576 | 858 | 1.33E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 4.62E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 713 | 884 | 8.6E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 455 | 712 | 6.2E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 66 | 2.2E-6 | - |
| SMART | SM00490 | helicmild6 | 763 | 843 | 9.0E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.3E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 523 | 726 | 1.1E-65 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.5263 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 535 | 709 | 31.182055 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 738 | 882 | 25.053757 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 655 | 663 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1073 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1056 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1072 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 985 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021851565.1 | DEAD-box ATP-dependent RNA helicase 40-like [Spinacia oleracea] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW7 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology