Basic Information
Locus ID:
GOSA_00003614
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig61 | 340290 | 352035 | - | GOSA_00003614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 40,859.89 Da | 50.33 | 72.19 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.65589E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 157 | 206 | 3.49041E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 345 | 374 | 3.2E-9 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 264 | 319 | 4.9E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 164 | 201 | 2.1E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.4E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 160 | 210 | 1.02E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 8.29E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 344 | 382 | 7.92E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 261 | 326 | 1.44E-22 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.6E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 343 | 382 | 3.5E-16 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 254 | 319 | 4.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 156 | 206 | 2.5E-20 | - |
| SMART | SM00165 | uba_6 | 339 | 376 | 0.011 | IPR015940 |
| SMART | SM00165 | uba_6 | 163 | 203 | 0.0029 | IPR015940 |
| SMART | SM00727 | CBM | 262 | 305 | 2.2E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.9E-21 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 382 | 8.1E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 161 | 204 | 12.474603 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.82571 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 345 | 377 | 12.016758 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 364 | 4.3E-22 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 290 | 312 | 4.3E-22 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 365 | 380 | 4.3E-22 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 148 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8BCQ7 | Ubiquitin receptor RAD23 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology