Basic Information
Locus ID:
GOSA_00003508
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig130 | 7049804 | 7056363 | - | GOSA_00003508 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 51,294.08 Da | 46.19 | 71.93 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 359 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 115 | 439 | 4.33E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 446 | 1.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 104 | 141 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 316 | 0.09 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 360 | 0.033 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 28 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021763109.1 | autophagy-related protein 18a-like [Chenopodium quinoa] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L9Q8 | Autophagy-related protein 18a-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology