Basic Information
Locus ID:
GOSA_00003451
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig130 | 6280292 | 6293778 | - | GOSA_00003451 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 99,721.93 Da | 45.17 | 81.70 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 699 | 875 | 2.98869E-65 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 279 | 874 | 8.1E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 277 | 877 | 8.24E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 266 | 508 | 3.5E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 671 | 887 | 5.8E-57 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 279 | 877 | 57.455719 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 820 | 837 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 280 | 295 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 253 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021861826.1 | ubiquitin carboxyl-terminal hydrolase 8 [Spinacia oleracea] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QF22 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_186300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology