Basic Information
Locus ID:
GOSA_00003436
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig130 | 6090585 | 6108568 | + | GOSA_00003436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 156,085.92 Da | 41.48 | 82.09 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 212 | 540 | 2.26633E-167 | - |
| CDD | cd00121 | MATH | 71 | 194 | 1.10741E-40 | IPR002083 |
| Pfam | PF00917 | MATH domain | 76 | 196 | 3.1E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 639 | 891 | 1.2E-75 | IPR024729 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 943 | 1027 | 3.9E-18 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 214 | 535 | 4.3E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1037 | 1247 | 1.4E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 209 | 566 | 1.71E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 67 | 203 | 1.01E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 699 | 816 | 4.3E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 67 | 210 | 1.6E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 954 | 1050 | 8.6E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 211 | 539 | 1.1E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 817 | 914 | 5.5E-28 | - |
| SMART | SM00061 | math_3 | 71 | 175 | 7.8E-23 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 214 | 538 | 40.117573 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 69 | 194 | 38.570854 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 454 | 471 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 215 | 230 | - | IPR018200 |
| Coils | Coil | Coil | 547 | 578 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021720606.1 | ubiquitin carboxyl-terminal hydrolase 12 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A540KEU8 | ubiquitinyl hydrolase 1 OS=Malus baccata OX=106549 GN=C1H46_041983 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology