Basic Information
Locus ID:
GOSA_00002816
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Oligouridylate-binding protein 1B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig130 | 388988 | 391475 | - | GOSA_00002816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 15,643.83 Da | 25.68 | 80.07 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 85 | 9.8E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 12 | 85 | 5.51E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 8 | 93 | 8.4E-14 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 26 | 100 | 4.8E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 99 | 11.417624 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.2 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021716558.1 | oligouridylate-binding protein 1B-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3BV12 | Oligouridylate-binding protein 1A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109987pilonHSYRG00101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology