Basic Information
Locus ID:
GOSA_00002815
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig130 | 377464 | 385607 | - | GOSA_00002815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 46,311.59 Da | 47.90 | 65.58 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 4.52538E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 336 | 6.54526E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 127 | 4.31205E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 320 | 6.1E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 123 | 4.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 1.6E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 342 | 5.84E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 222 | 3.76E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 133 | 5.91E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 238 | 341 | 2.2E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 138 | 3.7E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 139 | 219 | 1.5E-24 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 141 | 214 | 0.0085 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 54 | 125 | 4.3E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 3.7E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 262 | 332 | 1.2E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 16.909462 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 336 | 14.811647 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 129 | 14.69226 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 259 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021720428.1 | oligouridylate-binding protein 1B-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology