Basic Information
Locus ID:
GOSA_00002647
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 8033744 | 8035417 | - | GOSA_00002647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 46,510.28 Da | 46.16 | 71.01 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 349 | 388 | 6.1E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 71 | 131 | 1.16E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 143 | 261 | 2.75E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 343 | 394 | 1.74E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 127 | 273 | 2.1E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 339 | 392 | 3.1E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 346 | 388 | 11.058215 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021855141.1 | F-box protein At1g67340 [Spinacia oleracea] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0F6 | MYND-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_013430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology