HalophFGD

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Basic Information
Locus ID: GOSA_00002583
Species & Taxonomic ID: Suaeda aralocaspica & 224144
Genome Assembly: GCA_016808085.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
Contig111 7495618 7500707 + GOSA_00002583
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.25 109,866.80 Da 33.64 88.37 -0.18
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 800 849 1.7E-9 IPR002885
Pfam PF13041 PPR repeat family 659 708 4.0E-12 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 255 315 2.1E-11 IPR002885
Pfam PF13041 PPR repeat family 337 386 1.7E-9 IPR002885
Pfam PF13041 PPR repeat family 196 245 4.0E-12 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 718 778 2.1E-11 IPR002885
Pfam PF01535 PPR repeat 98 125 0.031 IPR002885
Pfam PF12854 PPR repeat 871 901 1.5E-7 IPR002885
Pfam PF01535 PPR repeat 561 588 0.031 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 655 722 2.5E-17 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 723 793 7.1E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 492 654 5.9E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 260 328 5.8E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 28 191 5.9E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 794 952 3.4E-26 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 329 407 7.2E-12 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 192 259 1.9E-17 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 769 802 1.4E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 234 268 2.7E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 340 374 1.8E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 306 339 1.4E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 269 303 3.5E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 98 126 6.2E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 662 695 4.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 697 731 2.7E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 199 232 4.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 732 766 3.5E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 877 908 6.4E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 803 837 1.8E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 561 589 6.2E-4 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 730 764 11.476539 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 660 694 11.871145 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 874 908 11.388848 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 338 372 10.040608 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 695 729 11.947875 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 765 800 10.775016 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 801 835 10.040608 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 267 301 11.476539 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 302 337 10.775016 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 232 266 11.947875 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 197 231 11.871145 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein. 0
RefSeq XP_048502285.1 pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q9M8W9 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2 0
TrEMBL A0A0K9R9E4 PPR_long domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_091790 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.