Basic Information
Locus ID:
GOSA_00002580
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 7478967 | 7484490 | + | GOSA_00002580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 146,073.27 Da | 39.17 | 106.31 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1054 | 1275 | 3.55311E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 741 | 1031 | 9.97837E-87 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 137 | 424 | 3.6569E-88 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 449 | 643 | 3.28132E-85 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 759 | 981 | 1.1E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 476 | 606 | 9.0E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 137 | 403 | 1.3E-19 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1073 | 1222 | 1.6E-28 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 129 | 428 | 9.42E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 741 | 1042 | 2.22E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1049 | 1283 | 1.01E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 474 | 654 | 5.74E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1039 | 1293 | 3.0E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 109 | 433 | 6.3E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 448 | 693 | 8.6E-59 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 706 | 1037 | 2.1E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 480 | 643 | 1.7E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1082 | 1274 | 9.5E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1056 | 1291 | 16.766844 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 743 | 1019 | 32.956966 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 137 | 416 | 29.287266 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 449 | 666 | 17.113647 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 579 | 593 | - | IPR017871 |
| Coils | Coil | Coil | 658 | 678 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021744390.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6U6 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology