Basic Information
Locus ID:
GOSA_00002378
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 5486980 | 5490902 | + | GOSA_00002378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 59,253.26 Da | 38.25 | 95.00 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 156 | 334 | 2.04E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 56 | 3.4E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 135 | 385 | 2.7E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 62 | 3.4E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 64 | 10.000863 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048499304.1 | putative F-box/LRR-repeat protein At4g15060 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9R5S3 | FBD domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_103490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_11925, gene_1351, gene_1901, gene_1902, gene_23215 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014650 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11163, Sbi_jg46136, Sbi_jg46137, Sbi_jg46138 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20478, Seu_jg20479 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002378, GOSA_00005474 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35396, Sgl40771, Sgl55731, Sgl60945 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0009890 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1016, evm.TU.LG15.934 |