Basic Information
Locus ID:
GOSA_00002277
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 4515542 | 4521733 | + | GOSA_00002277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 66,302.05 Da | 41.66 | 96.99 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 3 | 42 | 2.3E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 3.0E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 27 | 551 | 6.47E-32 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 38 | 3.92E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 8.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 152 | 592 | 5.2E-141 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 151 | 1.6E-39 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 327 | 350 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 385 | 409 | 0.83 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 494 | 519 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 445 | 468 | 320.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 6.1E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 301 | 323 | 310.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 8.83511 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_021756048.1 | protein AUXIN SIGNALING F-BOX 2-like [Chenopodium quinoa] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R4K3H4 | F-box protein OS=Bassia scoparia OX=83154 GN=AFB2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology