Basic Information
Locus ID:
GOSA_00002259
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 4395589 | 4403484 | + | GOSA_00002259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 67,782.24 Da | 30.80 | 87.14 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09261 | Alpha mannosidase middle domain | 19 | 57 | 2.9E-8 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 193 | 401 | 2.7E-43 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 484 | 590 | 1.3E-9 | IPR041147 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 6 | 58 | 8.5E-13 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 55 | 594 | 1.1E-132 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1180 | - | 68 | 190 | 5.6E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 17 | 67 | 1.8E-19 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 471 | 599 | 4.6E-33 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 191 | 450 | 1.5E-90 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682967.2 | alpha-mannosidase At3g26720 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MZJ0 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology