Basic Information
Locus ID:
GOSA_00002256
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 4368388 | 4379547 | + | GOSA_00002256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 116,708.01 Da | 37.32 | 85.17 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 57 | 332 | 0.0 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 625 | 825 | 7.7E-36 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 58 | 369 | 1.7E-94 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 920 | 1019 | 1.6E-10 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 374 | 465 | 1.4E-21 | IPR015341 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 46 | 370 | 1.83E-109 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 479 | 1022 | 1.41E-132 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 374 | 475 | 1.24E-28 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1180 | - | 499 | 624 | 3.7E-28 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 892 | 1026 | 4.7E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 57 | 337 | 2.6E-122 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 416 | 472 | 1.3E-20 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 625 | 873 | 7.0E-79 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 338 | 415 | 6.2E-31 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 374 | 448 | 3.5E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021851647.1 | alpha-mannosidase At3g26720-like [Spinacia oleracea] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZI9 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology