Basic Information
Locus ID:
GOSA_00002228
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig111 | 4092223 | 4093713 | - | GOSA_00002228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 35,490.48 Da | 54.01 | 87.26 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 35 | 285 | 9.77E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 298 | 1.7E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 164 | 202 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 294 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 161 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 66 | 107 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 211 | 8.770704 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021736101.1 | WD repeat-containing protein LWD1 [Chenopodium quinoa] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LR81 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology