Basic Information
Locus ID:
GOSA_00001853
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 9232421 | 9235289 | + | GOSA_00001853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 14,139.89 Da | 39.56 | 85.04 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 64 | 115 | 3.0E-9 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 64 | 116 | 2.75E-11 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 21 | 117 | 8.7E-14 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 118 | 12.665511 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32850.1 | ubiquitin-specific protease 11. | 0 |
| RefSeq | XP_021769582.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAQ3 | Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2 | 0 | |
| TrEMBL | A0A803MJX1 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001853 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0859s00007.v1.0 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g44540.1 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001240, Chr28G001160 |