Basic Information
Locus ID:
GOSA_00001730
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 7226524 | 7230578 | + | GOSA_00001730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 39,908.58 Da | 42.01 | 94.45 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 67 | 275 | 5.48593E-132 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 87 | 255 | 4.1E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 65 | 266 | 1.69E-37 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 220 | 351 | 1.89E-14 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 40 | 275 | 4.1E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 276 | 353 | 8.6E-18 | IPR027417 |
| SMART | SM00487 | ultradead3 | 81 | 284 | 1.4E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 78 | 352 | 1.5E-108 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 93 | 268 | 23.272505 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021768373.1 | mediator of RNA polymerase II transcription subunit 34 isoform X2 [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7T9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_097190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology