Basic Information
Locus ID:
GOSA_00001577
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 5128451 | 5170826 | - | GOSA_00001577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 268,658.41 Da | 42.44 | 87.83 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 362 | 440 | 2.1E-18 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 1062 | 1282 | 2.0E-30 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 659 | 882 | 8.2E-58 | IPR031646 |
| SUPERFAMILY | SSF50729 | PH domain-like | 1303 | 1430 | 1.11E-7 | - |
| SMART | SM00233 | PH_update | 1301 | 1433 | 7.7E-4 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 1300 | 1431 | 9.3063 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_048500810.1 | uncharacterized protein LOC104892878 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CD77 | PH domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g105600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology