Basic Information
Locus ID:
GOSA_00001576
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 5069818 | 5103298 | - | GOSA_00001576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 276,978.44 Da | 46.29 | 85.42 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1453 | 1621 | 1.4E-15 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 126 | 275 | 3.8E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2355 | 2430 | 7.1E-6 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 349 | 498 | 1.0E-10 | IPR009291 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 807 | 872 | 7.17E-5 | IPR035892 |
| SMART | SM00694 | dysfc | 1069 | 1106 | 0.0012 | IPR006614 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_019105061.2 | uncharacterized protein LOC104892878 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CD77 | PH domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g105600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology