Basic Information
Locus ID:
GOSA_00001382
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 2966346 | 2974543 | - | GOSA_00001382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 39,075.38 Da | 47.82 | 75.90 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 88 | 130 | 3.9E-11 | IPR001810 |
| Pfam | PF03048 | UL92 family | 239 | 291 | 3.1E-5 | IPR004289 |
| SUPERFAMILY | SSF81383 | F-box domain | 82 | 165 | 1.57E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 73 | 191 | 7.9E-14 | - |
| SMART | SM00256 | fbox_2 | 90 | 130 | 3.4E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 84 | 130 | 14.054506 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 70 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45360.1 | F-box family protein. | 0 |
| RefSeq | XP_021744740.1 | F-box protein SKIP31-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FHK0 | F-box protein SKIP31 OS=Arabidopsis thaliana OX=3702 GN=SKIP31 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RZU4 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_010630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23652, jg23653, jg36936 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14656 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003464 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g102400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4685, Sbi_jg7387 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12637 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001382 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51749, Sgl57055 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006630, gene:ENSEOMG00000021568 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009590, CQ.Regalona.r1.5BG0010000 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30195730, pistato.v30195930 |
| Apiaceae | Apium graveolens | 2 | Ag7G00247, Ag9G02679 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703108, gene-LOC103718560 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.61.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G22197 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000968m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g062390.2N, BniB04g016350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0067 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0015 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0105s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11433 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.77 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030699 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08926 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2941, BH06.2727, CH06.3060 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0550370, gene-QOZ80_6BG0503930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0725670.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035351, gene-QYE76_035735 |
| Poaceae | Oryza coarctata | 2 | Oco11G016930, Oco12G017130 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g49530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G272700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400973 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G033070, Chr05G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G674000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG056930, gene_TRIDC7BG049360 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G408600.1, TraesCS7B02G308300.4 ... |
| Poaceae | Zea mays | 1 | Zm00001eb227600_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40735 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33381 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.1450, evm.TU.LG10.530, evm.TU.LG17.538 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.46384.1, evm.TU.Scaffold_14_RagTag.690 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-734 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17049 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016003 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15823 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9047 |
| Salicaceae | Populus euphratica | 1 | populus_peu08147 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635464 |
| Solanaceae | Solanum chilense | 1 | SOLCI006126400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028423 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4001 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2620 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01100.v3.1 |