Basic Information
Locus ID:
GOSA_00001298
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 2058970 | 2068722 | - | GOSA_00001298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 61,319.73 Da | 47.65 | 72.67 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 501 | 537 | 6.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 368 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 413 | 0.0046 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 254 | 309 | 7.6E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 538 | 3.25E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 467 | 553 | 6.0E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 466 | 1.5E-94 | IPR015943 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 285 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 325 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 413 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 242 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 4.1E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 505 | 538 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 336 | 377 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 336 | 368 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 294 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 334 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 538 | 14.41838 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 524 | 538 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_021735944.1 | protein FIZZY-RELATED 2-like [Chenopodium quinoa] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXT9 | ANAPC4_WD40 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology