Basic Information
Locus ID:
GOSA_00001257
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 1605154 | 1606623 | + | GOSA_00001257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 36,061.34 Da | 63.92 | 63.37 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 39 | 128 | 3.5E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 36 | 128 | 3.67E-35 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 31 | 129 | 6.0E-38 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 35 | 128 | 5.6E-57 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 78 | 102 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 39 | 62 | 1.1E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 90 | 102 | 1.1E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 77 | 89 | 1.1E-20 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| Coils | Coil | Coil | 195 | 222 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11660.1 | winged-helix DNA-binding transcription factor family protein. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_021863251.1 | heat stress transcription factor B-2b [Spinacia oleracea] | 0 |
| Q6Z9C8 | Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QAJ4 | HSF_DOMAIN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_201140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology