Basic Information
Locus ID:
GOSA_00001091
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig38 | 65596 | 85631 | + | GOSA_00001091 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 118,360.76 Da | 45.72 | 76.63 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 931 | 963 | 0.0053 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 436 | 536 | 1.05E-12 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 718 | 1070 | 3.66E-45 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 268 | 537 | 2.1E-19 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 695 | 1071 | 9.4E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 839 | 879 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 800 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 882 | 921 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1030 | 1069 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 925 | 963 | 6.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 750 | 0.078 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 846 | 888 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 932 | 965 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 932 | 972 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 165 | 524 | 9.290998 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 950 | 964 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 368 | - | - |
| Coils | Coil | Coil | 564 | 584 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology