Basic Information
Locus ID:
GOSA_00001031
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 9444196 | 9445653 | - | GOSA_00001031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 33,246.22 Da | 32.45 | 67.66 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 60 | 1.28078E-18 | - |
| CDD | cd00325 | chitinase_GH19 | 76 | 305 | 6.57449E-116 | - |
| Pfam | PF00187 | Chitin recognition protein | 23 | 60 | 1.2E-14 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 75 | 305 | 1.6E-130 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 72 | 311 | 6.75E-108 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 64 | 3.67E-13 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 158 | 214 | 1.1E-120 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 80 | 311 | 1.1E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 63 | 3.0E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 23 | 60 | 1.7E-17 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 312 | 3.4E-126 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 62 | 11.00517 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 218 | 228 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 93 | 115 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 3.7E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 3.7E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 3.7E-7 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021860442.1 | basic endochitinase [Spinacia oleracea] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QAR7 | Chitin-binding type-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_205770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology