Basic Information
Locus ID:
GOSA_00000576
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig47 | 4870042 | 4871919 | - | GOSA_00000576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 42,420.62 Da | 44.88 | 78.72 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 326 | 368 | 4.69076E-15 | - |
| Pfam | PF13639 | Ring finger domain | 325 | 368 | 4.8E-13 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 156 | 223 | 7.4E-8 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 92 | 3.5E-14 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 370 | 3.24E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 373 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 326 | 367 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 368 | 12.297489 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667464.1 | putative RING-H2 finger protein ATL21A [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QGR3 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology